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Chondroitin sulphate and dermatan sulphate are both derived from the same polymer D-glucuronic acid beta (1-3)D-N-acetyl galactosamine beta (1-4). They can be sulphated at positions 4 or 6 of N-acetyl galactosamine and position 2 of the uronic acid. They are not N-sulphated
The difference between chontroitin sulphate and dermatan sulphate is the epimerisation of glucuronic acid to iduronic acid.
There are problems however with the nomenclature of a CS/DS chain. These are dealt with in depth elsewhere, and it is sufficient to say that the frequency with which iduronic acid must occur rather than glucuronic acid, for the chain to be called a DS chain is open to interpretation. Thus a chondroitin sulphate chain may have sequences of dermatan sulphate and visa versa.
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GlcUA-GalNAc-6S
Chondroitin sulphate A is the alternative name for chondroitin 6-sulphate i.e chondroitin sulphate which is sulphated on the C6 position of the GlcNAc.
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IdoUA-GalNAc-4S
Chondroitin sulphate B is the alternative name for dermatan sulphate. It is sulphated on the C4 position of GlcNAc but the C5 of the uronic acid has undergone epimerisation to Iduronic acid. Note the difference between this molecule and chondroitin 4-sulphate below.
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GlcUA-GalNAc-4S
Chondroitin sulphate C is the alternative name for chondroitin 4-sulphate i.e CS which is sulphated on the C4 position of the GlcNAc.
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It is possible to use enzymes to differentiate between choindroitin sulphate and dermatan sulphate. Chondroitinase AC will cleave only at glucuronate-containing disaccharides i.e. chondroitin sulphate, while chondroitinase B cleaves only at iduronate-containing disaccharides i.e. dermatan sulphate. Finally chondroitinase ABC cleaves at either, which given its name is no surprise
The ABC terminology is a throwback to the original nomenclature for these disaccharides which is still used. It is explained fully above.
Digestion buffer 0.1M TRIS/HCl pH 8.0; [1mM NaF (to inhibit sulphatases),- NOT NORMALLY ADDED]
For digesting GAGs to completion use 0.3units/mg GAG, 37 C.
This enzyme produces unsaturated disaccharides that can be monitored at 232nm. To assay the enzyme, monitor the increase in A232 over the first 5 minutes of reaction under controlled conditions. Dividing the increase in absorbance in 1 minute by the molar extinction coefficient (5.5) gives the (µ/m?)mole released per aliquot.
1 unit enzyme activity = release of 1 (µ/m?)mole disaccharide/minute
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A biblography of general Chondroitin Sulphate references along with some key primary references.
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